![]() ![]() ascpR: Fasp file downloading using the ascp command line program. To grant access to an account, you will need to add the new public key to the file named /.ssh/authorizedkeys.irst.ascpSRA: Fasp SRA data file downloading using the ascp command line.It is written and maintained primarily by Simon Tatham. Optional PuTTY style right-click paste and copy. Snapshot Docs Changes Wishlist PuTTY is a free implementation of SSH and Telnet for Windows and Unix platforms, along with an xterm terminal emulator. Runs on Windows, Mac and Linux Integrated SSH client with a connection manager.colDescriptions: Get column descriptions of SRAmetadb.sqlite. Home FAQ Feedback Licence Updates Mirrors Keys Links Team Download: Stable.entityGraph: Create a new graphNEL object from an input entity matrix or.getFASTQfile: Download SRA fastq files from EBI ENA through ftp or fasp.getFASTQinfo: Get SRA fastq file information and associated meta data from. Download Mountain Duck available from mountainduck.io to mount any remote server storage as a local disk in the Finder.app on Mac and the File Explorer on.getSRA: Fulltext search SRA meta data using SQLite fts3 module. ![]() getSRAdbFile: Download and unzip last version of from.getSRAfile: Download SRA data file through ftp or fasp.SraGraph: Create a new graphNEL object of SRA accessios from SRA full.SRAdb-package: Query NCBI SRA metadata within R or from a local SQLite.sraConvert: Cross-reference between GEO data types.listSRAfile: List sra, sra-lite or fastq data file names associated with.IGVsort: Sort an alignment track by the specified option.IGVsocket: Create a Socket Connection to IGV.IGVsnapshot: Make a file snapshot of the current IGV screen.IGVload: Load data into IGV via remote port call.IGVgoto: Go to a specified region in IGV.IGVcollapse: Collapse tracks in the IGV.getSRAinfo: Get SRA data file information from NCBI SRA. In fact, there’s no easy way of downloading an installer at all. GetFASTQfile ( in_acc, sra_con, destDir = getwd (), srcType = 'ftp', makeDirectory = FALSE, method = 'curl', ascpCMD = NULL )Ĭharacter vector of SRA accessions that could be be in one or more SRA sata types: study, sample, experiment and/or run.Ĭonnection to the SRAmetadb SQLite databaseĭestination directory to save downloaded fastq files startIGV: Start IGV from R with different amount maximum memory support. There is no official PutTTY download for mac. Type of transfer protocol, which should be "ftp" or "fasp". If TRUE and baseDir does not exists, storedir will be created to save downloaded files, otherwise downloaded fastq files will be saved to current directory.Ĭharacter vector of length 1, passed to the identicallyĪscp main commands, which should be constructed by a user according to the actual installation of Aspera Connect in the system, with proper options to be used. DOWNLOAD PUTTY FOR MAC WINDOWS DOWNLOADĮxample commands: "ascp -QT -l 300m -i /usr/local/aspera/connect/etc/asperaweb_id_dsa.putty" (Linux) or "'/Applications/Aspera Connect.app/Contents/Resources/ascp' -QT -l 300m -i '/Applications/Aspera Connect.app/Contents/Resources/asperaweb_id_dsa.putty'" (Mac OS X).
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